The effect of priming on blue carbon peat in the coastal ocean

News release from Pacific Northwest National Laboratory.

Link to original article; text follows:


Salt marshes like this one near St. Augustine, Florida, have stored organic carbon for hundreds to thousands of years in a low oxygen environment.

Coastal environments supporting seagrasses, salt marshes and mangroves are storehouses for vast reserves of organic carbon known as blue carbon. These reservoirs have trapped organic carbon beneath the surface for hundreds to thousands of years in a low oxygen environment.

Unfortunately, coastal zones are changing due to rising sea levels and human encroachment. The combination of erosion and habitat destruction is allowing the trapped blue carbon to mix with seawater. Organisms in seawater are consuming the organic carbon and releasing carbon dioxide into the atmosphere.

“There’s growing interest in blue carbon habitats, because they perform a natural and valuable service by sequestering CO2,” says Thomas Bianchi, Jon and Beverly Thompson Endowed Chair of Geological Sciences at the University of Florida. “Coastal plants use the CO2 to grow through photosynthesis, but they also store it for long periods in the soils and sediments they live in. That’s unique, because other plant habitats cycle CO2 out of their soils into the atmosphere much quicker.”

Bottles with peat and algae
The team members made leachates out of peat (the brown one) and stable isotopically labeled algae (the green one). They soaked the materials in water for a day at room temperature in the dark, then filtered the material to leave only the dissolved organic carbon.

Bianchi is a co-principal investigator studying the conversion of blue carbon to CO2as part of a fiscal year 2017 Facilities Integrating Collaborations for User Science proposal. Through FICUS, Bianchi and colleagues will use the expertise and capabilities of EMSL, the Environmental Molecular Sciences Laboratory, a DOE Office of Science user facility at Pacific Northwest National Laboratory, and the DOE Joint Genome Institute, also a DOE Office of Science user facility at Lawrence Berkeley National Laboratory.

The research team includes Co-PIs Andrew Ogram and Todd Osborne, postdoctoral associate Ana Arellano, and graduate students Elise Morrison and Derrick Vaughn, all with the University of Florida; Co-PI Nicholas Ward, a scientist at the Pacific Northwest National Laboratory; and Yina Liu, an EMSL postdoctoral researcher. A self-funded study, support comes from the Thompson endowment and the University of Florida.

“We’re interested in studying what happens when you take this big carbon sink in coastal soils and sediments, and you start carving at it with sea level rise and wave erosion,” says Bianchi. “What controls how quickly that carbon gets converted back into CO2?”

Priming decomposition

Priming is one of the factors affecting the speed stored carbon becomes CO2. For example, microbes have difficulty breaking down straw. Mixing straw with alfalfa accelerates the decomposition process. The microbes quickly eat the alfalfa, but they also break down the straw. The presence of more digestible material primes the straw to be broken down.

Peat priming bottles
The team performed a set of incubations in a temperature-controlled dark room. There were 36 bottles total with four different treatments, three time points for collecting genomic material and three replicates per treatment/time point.

Scientists have studied the priming effect in soils, but few studies have investigated priming in coastal systems. In this study, priming is the mixing of decayed higher plant material (plants with rooted systems) with coastal algae to allow microbes to break it down faster.

“We hypothesized that the breakdown of the stored blue carbon would be much faster in the presence of algae than in the absence of it,” says Bianchi.

Bianchi’s team tested the hypothesis with a series of experiments performed at the University of Florida Whitney Laboratory for Marine Bioscience using seawater, an algae mixture, and coastal peat from Florida wetlands in four treatments – (1) seawater control, (2) seawater and algae mixture, (3) seawater and peat, and (4) seawater, algae mixture and peat. They measured the amount of CO2 produced over time by the four treatments. The team used isotopes as chemical markers to track the source of the CO2 molecules. Samples from these experiments were submitted to EMSL and the DOE JGI for high-resolution measurements of organic carbon composition and microbial genetic responses.

“Our preliminary data supports our hypothesis,” says Bianchi. “In the presence of algae you get more blue carbon peat being converted to CO2.”

The priming effect could be more dramatic as oceans become greener with algae due to pollution from fertilizers and other farm runoff.

Getting to know microbes

Crescent Beach erosion
Crescent Beach, near the University of Florida Whitney Laboratory for Marine Bioscience, after Hurricane Matthew shows how potentially sensitive coastal areas are to erosion (the intracoastal waterway is on the other side of the dunes and the hurricane formed a new inlet).

The project is also using EMSL and DOE JGI capabilities to study microbial communities that convert peat into CO2. They want to know how communities change in the presence and absence of algae. They are also interested in how the microbes decompose peat, including what enzymes they use. The team is using EMSL’s mass spectrometry and nuclear magnetic resonance expertise and capabilities for this portion of the research.

“Being a FICUS project gives us a fantastic opportunity to use two of the best research facilities in the world,” says Bianchi. “Working with EMSL and (DOE) JGI will help us understand how priming works, because we really don’t know all the details about it.”

Bianchi says the study’s findings could improve climate models as the global models scale down. Sophisticated climate models are starting to account for regional effects. The findings could be added to a regional-based model that includes a conversion of land lost to CO2 with priming as an enhancement factor.

“There’s a bigger story,” says Bianchi. “A greener coastal ocean and a destabilized coastal environment due to sea level rise and land use changes are causing a rapid turnover of stored carbon that’s hundreds and thousands of years old being converted into CO2 in part through the priming process.”

Learn more about the current FICUS call for letters of intent, and how you can use the expertise and capabilities at EMSL and the DOE JGI to improve your research.

Undergraduate Research


Angelica Ares, an undergraduate Biology major working on her research project, within the UF Center for Undergraduate Research, in Dr. Bianchi’s lab was selected to present her research at the Gulf Coast Undergraduate Symposium in October 2016 at Rice University Houston, Texas. She and about 100 other students were selected from universities around the country to make a 15 minute oral presentation on results from their research. Angelica is working under the direction if Bianchi and one of his Ph.D students Xiaowen Zhang, on this project which is funded by the National Science Foundation. This work basically involves the relationship between carbon cycling and the ecohydrology of different vegetational habitats in Big Cyrpress Swamp, in southern Florida. Bianchi is co-PI along with Jon Martin, also in Geological Sciences at UF on this project, which is lead by Matthew Cohen in the UF School of Forest Resources and Conservation.

Dr. Thomas Bianchi Publishes New Book


Cross-posted from the UF Water Institute:

Dr. Thomas Bianchi, Jon and Beverly Thompson Endowed Chair of Geological Sciences, recently published a book titled Deltas and Humans. Bianchi, UF Water Institute Affiliate Faculty member, specializes in global carbon cycling working in coastal, riverine, and ocean environments.

Deltas and Humans focuses on human interaction with major deltas in relation to carbon cycling and sediments. The book is aimed towards an audience with a generalized science background.

Bianchi hopes this book will help individuals understand the intrinsic connections that exist throughout riverine areas. “There is a very sensitive relationship between what we do in altering the watersheds of big rivers and what happens at the coastline,” says Bianchi.

As major rivers flow through numerous countries, Bianchi’s book warns of the future “water wars” due to conflicting interests and demands. “This flow to the delta is really changing,” said Bianchi. “People are extracting more water for damming needs, agricultural needs and population growth. As climate changes, the availability of water is going to become a much more important thing than people realize.”

One of the ironies highlighted in Deltas and Humans is the critical usage of deltas in the development of early civilizations which contrasts to the lack of stability in similar delta regions today. This lack of stability in delta regions has a personal connection to Bianchi as he was personally affected by Hurricane Katrina during his time as faculty at Tulane University, where he lived on the largest delta in the U.S.

Beyond studying these crucial interactions, Bianchi also has additional expertise in organic geochemistry and biogeochemical dynamics of aquatic food chains. He has published 5 other books, has over 180 publications, two Fulbright Research Scholarships, and was made a Fellow of the American Association for the Advancement of Science (AAAS) in 2013. Bianchi looks forward to his future involvement with other faculty as he grows his connection to the UF Water Institute.

For more information about Deltas and Humans, visit Oxford University Press.


Anthrax sickens 13 in western Siberia, and a thawed-out reindeer corpse may be to blame


Cross-posted from the Washington Post.
Article by Ben Guarino

First a heatwave hit Siberia. Then came the anthrax.

Temperatures have soared in western Russia’s Yamal tundra this summer. Across Siberia, some provinces warmed an additional 10 degrees Fahrenheit beyond normal. In the fields, large bubbles of vegetation appeared above the melting permafrost — strange pockets of methane or, more likely, water. Record firesblazed through dry Russian grassland.

In one of the more unusual symptoms of unseasonable warmth, long-dormant bacteria appear to be active. For the first time since 1941, anthrax struck western Siberia. Thirteen Yamal nomads were hospitalized, including four children, the Siberian Times reported. The bacteria took an even worse toll on wildlife, claiming some 1,500 reindeer since Sunday.

According to NBC News, the outbreak is thought to stem from a reindeer carcass that died in the plague 75 years ago. As the old flesh thawed, the bacteria once again became active. The disease tore through the reindeer herds, prompting the relocation of dozens of the indigenous Nenet community. Herders face a quarantine that may last until September.

The governor, Dmitry Kobylkin, declared a state of emergency. On Tuesday, Kobylkin said “all measures” had been taken to isolate the area, according to AP. “Now the most important thing is the safety and health of our fellow countrymen — the reindeer herders and specialists involved in the quarantine.”

Anthrax has broken out in Russia several times, including one outbreak stemming from a 1979 accident at amilitary facility. To the south of Yamal, anthrax may rarely appear when infection spreads from cattle; a man died from such exposure in 2012, the Siberian Times reported.

Zombie bacteria that awaken from old corpses might sound like the stuff of an “X-Files” episode. The premise is far from a complete fiction, however.

For one, anthrax bacteria are hardy microbe. As University of Missouri bacteriologist George Stewart told the Missourian in 2014, the organisms turn into spores in the cold. They play the long game, waiting in the soil for the temperatures to rise. Once it hits a certain threshold, they morph back into a more mobile, infectious state.

In Missouri, anthrax tends to be more worrisome for farmers than for consumers. “It’s more of a threat if you’re a cow,” Stewart told the Missourian. “Cows are killed by anthrax when they pick up the spores when they’re grazing in grass or drinking water out of ponds, and that sort of thing.”

In Russia’s north, however, the situation is different. If the link between an old deer corpse and a new outbreak is confirmed, it will solidify concerns about anthrax some scientists have harbored for years. In 2011, two researchers from the Russian Academy of Sciences writing in the journal Global Health Action assessed the conditions required for anthrax to appear in Yakutia, a region to the east of Yamal that contains 200 burial grounds of cattle that died from the disease.

Citing earlier work from 2007, they estimated anthrax spores remain viable in the permafrost for 105 years. Buried deeper, the bacteria may be able to hibernate for even longer. At the same time, where meteorological data were available they indicate temperatures in Yakutia are increasing.

“As a consequence of permafrost melting, the vectors of deadly infections of the 18th and 19th centuries may come back,” the scientists warned, “especially near the cemeteries where the victims of these infections were buried.” Cattle grave sites should be monitored, they concluded, and “public health authorities should maintain permanent alertness.”

Anthrax microbes are not the only permafrost bacteria that have environmental scientists’ hackles raised. As University of Florida geologist Thomas S. Bianchi wrote at the Conversation in October, as the Arctic warms up it provides more organic matter for cold-climate bacteria to eat. Although the organic matter is ancient, it appears modern bacteria can still digest it. And as they consume the permafrost, the microorganisms excrete carbon dioxide — adding to the greenhouse gases already present in the atmosphere.